roiextractors.extractors package#
Subpackages#
- roiextractors.extractors.caiman package
- Submodules
- roiextractors.extractors.caiman.caimansegmentationextractor module
- Classes
CaimanSegmentationExtractorCaimanSegmentationExtractor.extractor_nameCaimanSegmentationExtractor.installedCaimanSegmentationExtractor.is_writableCaimanSegmentationExtractor.modeCaimanSegmentationExtractor.installation_mesgCaimanSegmentationExtractor.__del__()CaimanSegmentationExtractor._file_extractor_read()CaimanSegmentationExtractor._image_mask_sparse_read()CaimanSegmentationExtractor._background_image_mask_read()CaimanSegmentationExtractor._trace_extractor_read()CaimanSegmentationExtractor._raw_trace_extractor_read()CaimanSegmentationExtractor._correlation_image_read()CaimanSegmentationExtractor._summary_image_read()CaimanSegmentationExtractor.get_accepted_list()CaimanSegmentationExtractor.get_rejected_list()CaimanSegmentationExtractor.write_segmentation()CaimanSegmentationExtractor.get_image_size()CaimanSegmentationExtractor._abc_impl
- Module contents
- roiextractors.extractors.hdf5imagingextractor package
- Submodules
- roiextractors.extractors.hdf5imagingextractor.hdf5imagingextractor module
- Classes
Hdf5ImagingExtractorHdf5ImagingExtractor.extractor_nameHdf5ImagingExtractor.installedHdf5ImagingExtractor.is_writableHdf5ImagingExtractor.modeHdf5ImagingExtractor.installation_mesgHdf5ImagingExtractor.__del__()Hdf5ImagingExtractor.get_frames()Hdf5ImagingExtractor.get_video()Hdf5ImagingExtractor._abc_implHdf5ImagingExtractor.get_image_size()Hdf5ImagingExtractor.get_num_frames()Hdf5ImagingExtractor.get_sampling_frequency()Hdf5ImagingExtractor.get_channel_names()Hdf5ImagingExtractor.get_num_channels()Hdf5ImagingExtractor.write_imaging()
- Module contents
- roiextractors.extractors.numpyextractors package
- Submodules
- roiextractors.extractors.numpyextractors.numpyextractors module
- Classes
NumpyImagingExtractorNumpyImagingExtractor.extractor_nameNumpyImagingExtractor.installedNumpyImagingExtractor.is_writableNumpyImagingExtractor.installation_mesgNumpyImagingExtractor.get_video_shape()NumpyImagingExtractor.get_frames()NumpyImagingExtractor.get_video()NumpyImagingExtractor.get_image_size()NumpyImagingExtractor.get_num_frames()NumpyImagingExtractor.get_sampling_frequency()NumpyImagingExtractor.get_channel_names()NumpyImagingExtractor.get_num_channels()NumpyImagingExtractor.write_imaging()NumpyImagingExtractor._abc_impl
NumpySegmentationExtractorNumpySegmentationExtractor.extractor_nameNumpySegmentationExtractor.installedNumpySegmentationExtractor.is_writableNumpySegmentationExtractor.modeNumpySegmentationExtractor.installation_mesgNumpySegmentationExtractor._abc_implNumpySegmentationExtractor.image_dimsNumpySegmentationExtractor.get_accepted_list()NumpySegmentationExtractor.get_rejected_list()NumpySegmentationExtractor.roi_locationsNumpySegmentationExtractor.write_segmentation()NumpySegmentationExtractor.get_roi_ids()NumpySegmentationExtractor.get_image_size()
- Module contents
- roiextractors.extractors.nwbextractors package
- Submodules
- roiextractors.extractors.nwbextractors.nwbextractors module
- Classes
temporary_deprecation_message()check_nwb_install()NwbImagingExtractorNwbImagingExtractor.extractor_nameNwbImagingExtractor.installedNwbImagingExtractor.is_writableNwbImagingExtractor.modeNwbImagingExtractor.installation_mesgNwbImagingExtractor.__del__()NwbImagingExtractor.time_to_frame()NwbImagingExtractor.frame_to_time()NwbImagingExtractor.make_nwb_metadata()NwbImagingExtractor.get_frames()NwbImagingExtractor.get_video()NwbImagingExtractor.get_image_size()NwbImagingExtractor.get_num_frames()NwbImagingExtractor.get_sampling_frequency()NwbImagingExtractor.get_channel_names()NwbImagingExtractor.get_num_channels()NwbImagingExtractor.add_devices()NwbImagingExtractor.add_two_photon_series()NwbImagingExtractor.add_epochs()NwbImagingExtractor.get_nwb_metadata()NwbImagingExtractor.write_imaging()NwbImagingExtractor._abc_impl
NwbSegmentationExtractorNwbSegmentationExtractor.extractor_nameNwbSegmentationExtractor.installedNwbSegmentationExtractor.is_writableNwbSegmentationExtractor.modeNwbSegmentationExtractor.installation_mesgNwbSegmentationExtractor._abc_implNwbSegmentationExtractor.__del__()NwbSegmentationExtractor.get_accepted_list()NwbSegmentationExtractor.get_rejected_list()NwbSegmentationExtractor.get_images_dict()NwbSegmentationExtractor.get_roi_locations()NwbSegmentationExtractor.get_image_size()NwbSegmentationExtractor.get_nwb_metadata()NwbSegmentationExtractor.write_segmentation()
- Module contents
- roiextractors.extractors.schnitzerextractor package
- Submodules
- roiextractors.extractors.schnitzerextractor.cnmfesegmentationextractor module
- Classes
CnmfeSegmentationExtractorCnmfeSegmentationExtractor.extractor_nameCnmfeSegmentationExtractor.installedCnmfeSegmentationExtractor.is_writableCnmfeSegmentationExtractor.modeCnmfeSegmentationExtractor.installation_mesgCnmfeSegmentationExtractor.__del__()CnmfeSegmentationExtractor._file_extractor_read()CnmfeSegmentationExtractor._image_mask_extractor_read()CnmfeSegmentationExtractor._trace_extractor_read()CnmfeSegmentationExtractor._tot_exptime_extractor_read()CnmfeSegmentationExtractor._summary_image_read()CnmfeSegmentationExtractor._raw_datafile_read()CnmfeSegmentationExtractor.get_accepted_list()CnmfeSegmentationExtractor.get_rejected_list()CnmfeSegmentationExtractor.write_segmentation()CnmfeSegmentationExtractor.get_image_size()CnmfeSegmentationExtractor._abc_impl
- roiextractors.extractors.schnitzerextractor.extractsegmentationextractor module
- Classes
_decode_h5py_array()ExtractSegmentationExtractorExtractSegmentationExtractor.extractor_nameExtractSegmentationExtractor.installedExtractSegmentationExtractor.installation_mesgExtractSegmentationExtractor.__new__()ExtractSegmentationExtractor._assert_file_is_mat()ExtractSegmentationExtractor._get_default_output_struct_name_from_file()ExtractSegmentationExtractor._assert_output_struct_name_is_in_file()ExtractSegmentationExtractor._check_extract_file_version()ExtractSegmentationExtractor._abc_impl
NewExtractSegmentationExtractorNewExtractSegmentationExtractor.extractor_nameNewExtractSegmentationExtractor.installedNewExtractSegmentationExtractor.installation_mesgNewExtractSegmentationExtractor.is_writableNewExtractSegmentationExtractor.modeNewExtractSegmentationExtractor.close()NewExtractSegmentationExtractor._file_extractor_read()NewExtractSegmentationExtractor._config_struct_to_dict()NewExtractSegmentationExtractor._image_mask_extractor_read()NewExtractSegmentationExtractor._trace_extractor_read()NewExtractSegmentationExtractor.get_accepted_list()NewExtractSegmentationExtractor.get_rejected_list()NewExtractSegmentationExtractor.get_roi_ids()NewExtractSegmentationExtractor.get_image_size()NewExtractSegmentationExtractor.get_images_dict()NewExtractSegmentationExtractor._abc_impl
LegacyExtractSegmentationExtractorLegacyExtractSegmentationExtractor.extractor_nameLegacyExtractSegmentationExtractor.installedLegacyExtractSegmentationExtractor.is_writableLegacyExtractSegmentationExtractor.modeLegacyExtractSegmentationExtractor.installation_mesgLegacyExtractSegmentationExtractor.__del__()LegacyExtractSegmentationExtractor._file_extractor_read()LegacyExtractSegmentationExtractor._image_mask_extractor_read()LegacyExtractSegmentationExtractor._trace_extractor_read()LegacyExtractSegmentationExtractor._tot_exptime_extractor_read()LegacyExtractSegmentationExtractor._summary_image_read()LegacyExtractSegmentationExtractor._raw_datafile_read()LegacyExtractSegmentationExtractor.get_accepted_list()LegacyExtractSegmentationExtractor.get_rejected_list()LegacyExtractSegmentationExtractor.get_image_size()LegacyExtractSegmentationExtractor._abc_impl
- Module contents
- roiextractors.extractors.simaextractor package
- Submodules
- roiextractors.extractors.simaextractor.simasegmentationextractor module
- Classes
SimaSegmentationExtractorSimaSegmentationExtractor.extractor_nameSimaSegmentationExtractor.installedSimaSegmentationExtractor.is_writableSimaSegmentationExtractor.modeSimaSegmentationExtractor.installation_mesgSimaSegmentationExtractor._convert_sima()SimaSegmentationExtractor._file_extractor_read()SimaSegmentationExtractor._image_mask_extractor_read()SimaSegmentationExtractor._trace_extractor_read()SimaSegmentationExtractor._summary_image_read()SimaSegmentationExtractor.get_accepted_list()SimaSegmentationExtractor.get_rejected_list()SimaSegmentationExtractor.write_segmentation()SimaSegmentationExtractor.get_image_size()SimaSegmentationExtractor._abc_impl
- Module contents
- roiextractors.extractors.suite2p package
- Submodules
- roiextractors.extractors.suite2p.suite2psegmentationextractor module
- Classes
Suite2pSegmentationExtractorSuite2pSegmentationExtractor.extractor_nameSuite2pSegmentationExtractor.installedSuite2pSegmentationExtractor.is_writableSuite2pSegmentationExtractor.modeSuite2pSegmentationExtractor.installation_mesgSuite2pSegmentationExtractor.get_available_channels()Suite2pSegmentationExtractor.get_available_planes()Suite2pSegmentationExtractor._load_npy()Suite2pSegmentationExtractor.get_num_frames()Suite2pSegmentationExtractor.get_accepted_list()Suite2pSegmentationExtractor.get_rejected_list()Suite2pSegmentationExtractor._correlation_image_read()Suite2pSegmentationExtractor.roi_locationsSuite2pSegmentationExtractor.get_roi_pixel_masks()Suite2pSegmentationExtractor.get_image_size()Suite2pSegmentationExtractor._abc_implSuite2pSegmentationExtractor.write_segmentation()
- Module contents
- roiextractors.extractors.tiffimagingextractor package
Module contents#
All specialized ImagingExtractors and SegmentationExtractors are defined here.